Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015833159.1_cds_XP_016505129.1_18500
CDS Infomation

[gene=LOC107823054] [db_xref=GeneID:107823054] [protein=CRC domain-containing protein TSO1-like] [protein_id=XP_016505129.1] [location=join(5248..5316,7119..7264,7376..7931,8019..8174,9536..10200,10285..10359,10435..10621,10703..10801,10884..10991)] [gbkey=CDS]
Sequence

ATGGACTCCCCTGAACCTTCCTCAAAGACCGCTACCATTAACTCTACAATCAACCCCACA
CATGCCGAAGACTCACCTGTCTTCAGTTATATTAGCAACCTCTCTCCCATACAACCTGTC
AAGGCCGCTCCAGTTGTGCAAGGTTTCCCAGGGCTGAATTCTCCTCCTCTTTTATTTACC
TCACCTCGAGTTAGTGCACATAGTCGATTGAGAAGGAGCCAGTTTCCTCAACTATCCAGT
GAAGTGTTTTCTGGGAAGAATGAGGATAATAACAATGCTATCACAGATTCAGATGGCAAT
GGAGCATCTGTTTCTCAATTGAGAAGTGAACTAAGCCCTTCTGTTCAGAAAGTATCTGAT
AATAACATATCTGTGCCCGATGAAAGTGGGAGTCTCATAAGATGTGTGGATGAGTTCTTA
GTTGATGTTTCGAATTCAGAGTCTGCTAATCCTTCAAATTCAACTAATCCCAGCCCAAAA
GTAGCTGATAATATTCCTCAATCACCAAATAGTGCAGCGGAATCTGTTGCTGATTTTGCA
AGTAAGGATGCAAGAAAAGACGAGATTCCAAAAGATGCTGCCCGTGTTGTTGTAGAGCAA
GCTGAAGAGGAGAATAAGGGAAAGTCTTCATCTGATCAGAAAGATAATGGGATTTACAAT
ACCAGTACTGATTCTGATCTGCCATCTCCTGATTTATGCACAAAGATTGAGCCTGACTTG
CCTGCTGATAATTCATTGCATTATCATTGTAGTGACCGTCAGATGGCTCAGCTTTCACGG
GCTGACCATGCTATGTTGGATGAGGCTTCTGATATACAGACCGAACTATTGGAGAATGCA
CATGATTGCAGAAATGATAATGATAAGATTAACTCAATGTCAAGTGCACCAGATGAATGC
ATAATGCAACATGATTCTCAAACCAAGGCTGGTCAATATCAAAGTGGAATACGTAGGCGT
TGTCTCCAATTTGAAGATGCTCAACGGAAGATATCACCAACTAGCGTGGGTTTACAGAAC
GCTTCAGATGTTGTGAGCTGCTCAATACCACCTGTCAGTCCTGCTGTCATAGAGGTCATA
GCATCAGGTTCATCAAATAGATCATCAACTGCAAGCAGTAGGCCATCTACCCAACTGACA
TCTTCTTCTGACAATTTTGGAAGCTTTGCTGTTAAAGTTCCCAAGCCATCTGGTATTGGC
TTGCACTTAAATAGTATAGCTATGCAAGCTGGTTCTCGTGGTTCTCGTGCAACTGTAAGC
GTGAAATCAGCTGAGAGGGGTAACTTGAGCATATCTGGGAAGAAGTTGATGTCCATGATG
AGCTGTCACCCTTCTGAGAACCTAAAGAGTTGCTCGATATCTTCAAATGTGGTTGGGAGC
CATTTGACTATCGGTGACAATGATGGTGAACATGAAAGTTATGGGACGAATGCAGAAAGT
GCTGCCTCTTTGCATCTTAATGCTGCAAAACCTTTAAACAACACTGTGCTCTTGAAGCCA
ACGGAGCATACTATAAGTCACAAAAGGAAGTCTAGCTCCGAATATATCGACAGCCCTATG
AACTACAATCAGTCTAGTCCCAAAAAGAAAAGGAAGAAACCCTCAGATGCCTATGATGGT
GATGGCTGCAAAAGATGCAATTGTAAGAAGAGTAAATGCTTGAAACTTTATTGTGATTGC
TTTGCCGCTGGAATATATTGTGCGGGGTCTTGTGCTTGTCAAGGTTGCTTCAACAGACTT
GAATATGAAGACACGGTTAATGATGTGCGGCAACAAATCCAATCTCGGAATCCCCTGGCA
TTTTGTCCAAAAATTGTGCAGCATCCCACTGATTCCCCTGCAAGTATTCTTGGGGCGGAA
GGAGCAAGTTTTACGCCTCCCTCTGCAAGGCACAAAAGAGGTTGTAGCTGCAAGAAGTCA
ATGTGTTTGAAAAAGTACTGCGAGTGCTATCAGGCTAATGTTGGATGTTCCAGTGGATGC
CGTTGTGAAGGATGTAAAAATGTCTATGGTCTAAAGGAAGGTATTAGCAACATAACTTTT
CCTGCTAACTTGCTGAGCTAA

Peptide Sequence

PEP ID

XP_016505129.1
PEP Infomation

PREDICTED: CRC domain-containing protein TSO1-like [Nicotiana tabacum]
Sequence

MDSPEPSSKTATINSTINPTHAEDSPVFSYISNLSPIQPVKAAPVVQGFPGLNSPPLLFT
SPRVSAHSRLRRSQFPQLSSEVFSGKNEDNNNAITDSDGNGASVSQLRSELSPSVQKVSD
NNISVPDESGSLIRCVDEFLVDVSNSESANPSNSTNPSPKVADNIPQSPNSAAESVADFA
SKDARKDEIPKDAARVVVEQAEEENKGKSSSDQKDNGIYNTSTDSDLPSPDLCTKIEPDL
PADNSLHYHCSDRQMAQLSRADHAMLDEASDIQTELLENAHDCRNDNDKINSMSSAPDEC
IMQHDSQTKAGQYQSGIRRRCLQFEDAQRKISPTSVGLQNASDVVSCSIPPVSPAVIEVI
ASGSSNRSSTASSRPSTQLTSSSDNFGSFAVKVPKPSGIGLHLNSIAMQAGSRGSRATVS
VKSAERGNLSISGKKLMSMMSCHPSENLKSCSISSNVVGSHLTIGDNDGEHESYGTNAES
AASLHLNAAKPLNNTVLLKPTEHTISHKRKSSSEYIDSPMNYNQSSPKKKRKKPSDAYDG
DGCKRCNCKKSKCLKLYCDCFAAGIYCAGSCACQGCFNRLEYEDTVNDVRQQIQSRNPLA
FCPKIVQHPTDSPASILGAEGASFTPPSARHKRGCSCKKSMCLKKYCECYQANVGCSSGC
RCEGCKNVYGLKEGISNITFPANLLS

Transcript Sequence

Gene sequence data has not been registered.